The computer’s name is pminformatics.rush.edu The current directory has been set to /home/pranav/work/pranavmishra90/courses/by-mishra/research-data-management
Bariatric Run Notebook
An analysis of the MBSA-QIP Dataset
Caution: The run directory already exists for Run # 001 A figures directory is already present: /home/pranav/work/pranavmishra90/courses/by-mishra/research-data-management/data/analysis/bariatric/runs/run_001/figures/ A tables directory is already present: /home/pranav/work/pranavmishra90/courses/by-mishra/research-data-management/data/analysis/bariatric/runs/run_001/tables/ A notebook directory is already present: /home/pranav/work/pranavmishra90/courses/by-mishra/research-data-management/data/analysis/bariatric/runs/run_001/notebooks/
Import Data
Statistics for Main dataframe
There are 1,021,936 cases with 245 variables (columns).
Data Processing
Subset the data
Filtering for CPT: ['43644']
The total MBSA-QIP dataset mbsa_main_df has 1,021,936 cases.
After filtering, 269,926 cases remain in the dataset mbsa_df
Generate Figures and Tables
Age
'Figure saved to /home/pranav/work/pranavmishra90/courses/by-mishra/research-data-management/data/analysis/bariatric/runs/run_001/figures//demographics/Run001_Demographics-Donor_Sex.jpg'
'Figure saved to /home/pranav/work/pranavmishra90/courses/by-mishra/research-data-management/data/analysis/bariatric/runs/run_001/figures//demographics/Run001_Demographics-Race.jpg'
'Figure saved to /home/pranav/work/pranavmishra90/courses/by-mishra/research-data-management/data/analysis/bariatric/runs/run_001/figures//demographics/Run001_Demographics-Ethnicity.jpg'
'Figure saved to /home/pranav/work/pranavmishra90/courses/by-mishra/research-data-management/data/analysis/bariatric/runs/run_001/figures//surgery/Run001_Sx-OPLENGTH_PREVSURG.jpg'